Variant report

Variant	rs37705
Chromosome Location	chr5:59716945-59716946
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10514896	0.95[ASN][1000 genomes]
rs1108977	0.94[ASN][1000 genomes]
rs16877953	0.82[ASN][1000 genomes]
rs16877954	0.82[ASN][1000 genomes]
rs16877976	0.84[ASN][1000 genomes]
rs2961773	0.93[ASN][1000 genomes]
rs2961774	0.93[ASN][1000 genomes]
rs34000941	0.84[ASN][1000 genomes]
rs36043303	0.93[ASN][1000 genomes]
rs364917	0.81[EUR][1000 genomes]
rs37686	0.99[ASN][1000 genomes]
rs37687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37688	0.95[ASN][1000 genomes]
rs37689	0.97[ASN][1000 genomes]
rs37692	1.00[ASN][1000 genomes]
rs37696	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37699	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs37703	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs37704	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37706	1.00[ASN][1000 genomes]
rs37707	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37708	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37709	1.00[ASN][1000 genomes]
rs39726	0.96[ASN][1000 genomes]
rs401207	0.81[EUR][1000 genomes]
rs40218	0.94[ASN][1000 genomes]
rs40361	0.96[ASN][1000 genomes]
rs42222	1.00[ASN][1000 genomes]
rs441391	0.86[ASN][1000 genomes]
rs450407	0.86[ASN][1000 genomes]
rs615429	0.88[ASN][1000 genomes]
rs702552	0.86[ASN][1000 genomes]
rs789394	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1015381	chr5:59678425-59772485	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1034331	chr5:59678773-59773467	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1018614	chr5:59708223-59910308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1033344	chr5:59710033-59773467	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv598289	chr5:59714130-59757242	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv968178	chr5:59715355-59730443	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59716800-59717000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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