Variant report

Variant	rs37708
Chromosome Location	chr5:59714130-59714131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:59700212..59701783-chr5:59712786..59715237,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10514896	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs1108977	0.95[ASN][1000 genomes]
rs152312	0.93[JPT][hapmap]
rs16877953	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs16877954	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs16877976	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs173591	0.93[JPT][hapmap]
rs251726	0.93[JPT][hapmap]
rs26951	0.93[JPT][hapmap]
rs27224	0.85[JPT][hapmap]
rs2961773	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs2961774	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs34000941	0.83[ASN][1000 genomes]
rs36043303	0.92[ASN][1000 genomes]
rs364917	0.82[TSI][hapmap]
rs371424	0.83[EUR][1000 genomes]
rs37685	0.82[EUR][1000 genomes]
rs37686	0.98[ASN][1000 genomes]
rs37687	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs37688	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs37689	0.96[ASN][1000 genomes]
rs37691	0.89[GIH][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs37692	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs37694	0.83[EUR][1000 genomes]
rs37695	0.85[EUR][1000 genomes]
rs37696	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37698	0.82[EUR][1000 genomes]
rs37699	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs37700	0.82[EUR][1000 genomes]
rs37703	0.95[ASN][1000 genomes]
rs37704	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37705	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37706	0.99[ASN][1000 genomes]
rs37707	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37709	0.99[ASN][1000 genomes]
rs37761	1.00[JPT][hapmap]
rs37762	0.93[JPT][hapmap]
rs39726	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs401207	0.82[TSI][hapmap]
rs40218	0.94[ASN][1000 genomes]
rs40219	0.93[JPT][hapmap]
rs40361	0.95[ASN][1000 genomes]
rs404202	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs411255	0.83[EUR][1000 genomes]
rs42222	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs424626	0.83[EUR][1000 genomes]
rs42968	0.83[EUR][1000 genomes]
rs441391	0.85[ASN][1000 genomes]
rs446883	0.83[EUR][1000 genomes]
rs450407	0.85[ASN][1000 genomes]
rs615429	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs702552	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs702553	0.83[EUR][1000 genomes]
rs702554	0.93[JPT][hapmap]
rs789389	0.87[GIH][hapmap]
rs789394	0.87[ASN][1000 genomes]
rs789395	0.81[EUR][1000 genomes]
rs789615	0.84[GIH][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1015381	chr5:59678425-59772485	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1034331	chr5:59678773-59773467	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1018614	chr5:59708223-59910308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1033344	chr5:59710033-59773467	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv598289	chr5:59714130-59757242	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59712400-59716800	Enhancers	HepG2	liver
2	chr5:59713200-59716000	Weak transcription	Primary B cells from cord blood	blood

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