Variant report

Variant	rs1108977
Chromosome Location	chr5:59703601-59703602
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10514896	0.99[ASN][1000 genomes]
rs12188899	0.81[ASN][1000 genomes]
rs16877953	0.86[ASN][1000 genomes]
rs16877954	0.86[ASN][1000 genomes]
rs16877976	0.88[ASN][1000 genomes]
rs2961773	0.97[ASN][1000 genomes]
rs2961774	0.98[ASN][1000 genomes]
rs34000941	0.88[ASN][1000 genomes]
rs34761935	0.80[ASN][1000 genomes]
rs36043303	0.97[ASN][1000 genomes]
rs37686	0.93[ASN][1000 genomes]
rs37687	0.93[ASN][1000 genomes]
rs37688	0.91[ASN][1000 genomes]
rs37689	0.91[ASN][1000 genomes]
rs37692	0.94[ASN][1000 genomes]
rs37696	0.95[ASN][1000 genomes]
rs37699	0.89[ASN][1000 genomes]
rs37703	0.90[ASN][1000 genomes]
rs37704	0.94[ASN][1000 genomes]
rs37705	0.94[ASN][1000 genomes]
rs37706	0.94[ASN][1000 genomes]
rs37707	0.95[ASN][1000 genomes]
rs37708	0.95[ASN][1000 genomes]
rs37709	0.94[ASN][1000 genomes]
rs39726	0.92[ASN][1000 genomes]
rs40218	0.88[ASN][1000 genomes]
rs40361	0.90[ASN][1000 genomes]
rs42222	0.94[ASN][1000 genomes]
rs441391	0.81[ASN][1000 genomes]
rs450407	0.81[ASN][1000 genomes]
rs615429	0.82[ASN][1000 genomes]
rs702552	0.81[ASN][1000 genomes]
rs789394	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1015381	chr5:59678425-59772485	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1034331	chr5:59678773-59773467	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59695000-59712600	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59696000-59713200	Weak transcription	Aorta	Aorta
3	chr5:59701200-59705800	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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