Variant report

Variant	rs10514890
Chromosome Location	chr5:59582595-59582596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10461373	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10461452	0.89[CEU][hapmap];0.97[GIH][hapmap];0.87[EUR][1000 genomes]
rs10461453	0.87[EUR][1000 genomes]
rs10514891	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514895	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs12653662	0.90[CEU][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12656804	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656871	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12659623	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158470	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158573	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13159724	0.88[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13178509	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13185075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16877926	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16877953	0.89[CEU][hapmap];0.90[GIH][hapmap];0.93[TSI][hapmap]
rs16877954	0.89[CEU][hapmap]
rs16877976	0.89[CEU][hapmap]
rs2961774	0.87[CEU][hapmap]
rs34114616	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34757284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34762984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35022567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35250060	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35813355	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35955333	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4274945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4276368	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4515249	0.88[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699954	0.83[JPT][hapmap]
rs4700373	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6880937	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71628002	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71630003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71630005	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7711621	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7718384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731452	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7735398	1.00[ASW][hapmap];0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59559600-59584800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59581000-59583400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:59581400-59583400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:59581400-59583400	Enhancers	Primary hematopoietic stem cells	blood
5	chr5:59581600-59582600	Enhancers	Fetal Brain Male	brain
6	chr5:59581600-59582800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:59581600-59583000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:59581800-59583400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:59582200-59582600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr5:59582200-59583200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:59582200-59591400	Weak transcription	Aorta	Aorta
12	chr5:59582400-59583000	Enhancers	GM12878-XiMat	blood
13	chr5:59582400-59583400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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