Variant report

Variant	rs4700373
Chromosome Location	chr5:59626368-59626369
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:59624456..59627842-chr5:59630040..59632479,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10461373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10461452	0.86[CEU][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes]
rs10461453	0.94[EUR][1000 genomes]
rs10514890	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10514891	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes]
rs10514892	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10514895	1.00[CEU][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes]
rs10514896	0.87[CEU][hapmap]
rs12653662	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12656804	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12656836	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12656871	1.00[CEU][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes]
rs12659623	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13158470	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13158573	0.82[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes]
rs13159724	0.85[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13178509	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13185075	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes]
rs16877859	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs16877926	1.00[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16877953	0.86[CEU][hapmap]
rs16877954	0.87[CEU][hapmap]
rs16877976	0.87[CEU][hapmap]
rs2961773	0.87[CEU][hapmap]
rs2961774	1.00[CEU][hapmap]
rs34114616	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34757284	0.94[EUR][1000 genomes]
rs34762984	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35022567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35250060	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35813355	0.94[EUR][1000 genomes]
rs35955333	0.92[EUR][1000 genomes]
rs4274945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4276368	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4515249	0.87[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4699954	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6869495	0.81[JPT][hapmap]
rs6880937	0.97[EUR][1000 genomes]
rs71628002	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71630003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71630005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7711621	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs7711707	0.94[EUR][1000 genomes]
rs7718384	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7731452	0.94[EUR][1000 genomes]
rs7735398	0.88[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59620400-59629400	Weak transcription	Aorta	Aorta
2	chr5:59620400-59631000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:59625200-59646800	Weak transcription	Primary B cells from cord blood	blood
4	chr5:59625800-59626800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr5:59626000-59626400	Enhancers	Fetal Brain Female	brain
6	chr5:59626000-59626600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:59626000-59626600	Enhancers	Stomach Smooth Muscle	stomach
8	chr5:59626200-59627800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:59626200-59630000	Enhancers	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links