Variant report

Variant	rs6869495
Chromosome Location	chr5:59650536-59650537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10461452	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs10461453	0.94[ASN][1000 genomes]
rs10514895	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12656871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13165296	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs13168619	0.85[EUR][1000 genomes]
rs13172481	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs16874969	1.00[CEU][hapmap];0.93[GIH][hapmap];0.86[TSI][hapmap]
rs16877926	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs34038162	0.89[EUR][1000 genomes]
rs35335033	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35644384	0.89[EUR][1000 genomes]
rs35914313	0.89[EUR][1000 genomes]
rs4349679	0.87[GIH][hapmap];0.86[TSI][hapmap]
rs4394088	0.89[GIH][hapmap];0.86[TSI][hapmap]
rs4502776	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs4515249	0.90[JPT][hapmap]
rs4699954	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4700373	0.81[JPT][hapmap]
rs56341652	0.89[EUR][1000 genomes]
rs6860626	0.89[EUR][1000 genomes]
rs6861084	0.89[EUR][1000 genomes]
rs6862735	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes]
rs71630006	0.89[EUR][1000 genomes]
rs7706560	0.81[EUR][1000 genomes]
rs7711093	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap]
rs7733705	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes]
rs7735958	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59647000-59655600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr5:59647200-59658000	Weak transcription	Hela-S3	cervix
3	chr5:59647200-59694200	Weak transcription	Primary B cells from cord blood	blood
4	chr5:59649000-59651000	Enhancers	Fetal Brain Male	brain
5	chr5:59649400-59652600	Weak transcription	Pancreas	Pancrea
6	chr5:59649400-59668200	Weak transcription	Gastric	stomach
7	chr5:59650000-59651200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:59650200-59650800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr5:59650400-59651000	Weak transcription	Fetal Brain Female	brain
10	chr5:59650400-59657600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:59650400-59674800	Weak transcription	Aorta	Aorta

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