Variant report

Variant	rs7711093
Chromosome Location	chr5:59593138-59593139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12653662	0.81[ASW][hapmap];0.81[LWK][hapmap];0.82[MKK][hapmap]
rs13165296	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs13172481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs13178509	0.81[ASW][hapmap];0.89[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs1423246	0.81[GIH][hapmap]
rs16874969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap]
rs4349679	0.93[GIH][hapmap];0.95[TSI][hapmap]
rs4394088	0.96[GIH][hapmap];0.95[TSI][hapmap]
rs4502776	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4580739	0.81[GIH][hapmap]
rs4699954	1.00[CEU][hapmap]
rs6862735	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6869495	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap]
rs6893928	0.88[YRI][hapmap]
rs6897671	0.81[GIH][hapmap]
rs7711108	1.00[YRI][hapmap]
rs7733705	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7735958	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7737905	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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