Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10461451	0.83[JPT][hapmap]
rs1115372	0.86[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12653863	0.83[JPT][hapmap]
rs13165296	0.81[GIH][hapmap]
rs13166747	0.81[JPT][hapmap]
rs13171028	0.83[JPT][hapmap]
rs13172481	0.81[GIH][hapmap]
rs1363862	0.90[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1423246	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16874969	0.81[GIH][hapmap]
rs4349679	0.83[GIH][hapmap]
rs4394088	0.85[GIH][hapmap]
rs4409049	0.84[JPT][hapmap]
rs4580739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699955	0.84[ASN][1000 genomes]
rs6449467	0.83[JPT][hapmap]
rs6860887	0.86[CEU][hapmap];0.82[CHB][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6862735	0.81[GIH][hapmap]
rs6878055	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6897671	0.82[ASW][hapmap];0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7711093	0.81[GIH][hapmap]
rs7714394	1.00[CEU][hapmap]
rs7733705	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59638000-59649400	Weak transcription	Fetal Brain Female	brain
2	chr5:59643000-59650000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:59644000-59649000	Weak transcription	Aorta	Aorta
4	chr5:59646200-59649000	Weak transcription	Fetal Brain Male	brain
5	chr5:59646400-59648800	Weak transcription	Pancreas	Pancrea
6	chr5:59647000-59655600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:59647200-59648800	Weak transcription	Stomach Mucosa	stomach
8	chr5:59647200-59658000	Weak transcription	Hela-S3	cervix
9	chr5:59647200-59694200	Weak transcription	Primary B cells from cord blood	blood
10	chr5:59648400-59648800	Weak transcription	Gastric	stomach

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