Variant report

Variant	rs16878197
Chromosome Location	chr5:59811664-59811665
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:59809546..59811841-chr5:59829888..59832066,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10516153	0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878201	0.90[AMR][1000 genomes]
rs16878203	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878205	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878228	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3846458	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3846459	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3846460	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3857233	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3857234	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4133469	1.00[CEU][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58709164	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60446062	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60568722	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73093122	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093127	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093135	1.00[AMR][1000 genomes]
rs73093138	0.90[AMR][1000 genomes]
rs73093141	1.00[AMR][1000 genomes]
rs73110513	1.00[AMR][1000 genomes]
rs73110519	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73110526	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7719584	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7723069	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7737012	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1018614	chr5:59708223-59910308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv881711	chr5:59724947-59890278	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv598297	chr5:59734004-59862453	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59801400-59813800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:59801800-59813000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:59802400-59812400	Weak transcription	Primary B cells from cord blood	blood
4	chr5:59804200-59815800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr5:59806600-59814000	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:59806800-59813800	Weak transcription	Left Ventricle	heart
7	chr5:59806800-59816000	Weak transcription	Fetal Muscle Leg	muscle
8	chr5:59807000-59811800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr5:59808800-59813800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:59810600-59811800	Enhancers	GM12878-XiMat	blood
11	chr5:59810600-59816000	Weak transcription	Monocytes-CD14+_RO01746	blood

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