Variant report

Variant	rs16878247
Chromosome Location	chr7:14679484-14679485
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10277901	0.85[EUR][1000 genomes]
rs16878249	0.89[EUR][1000 genomes]
rs16878256	0.89[EUR][1000 genomes]
rs17168328	0.89[EUR][1000 genomes]
rs17168330	0.89[EUR][1000 genomes]
rs62445594	1.00[EUR][1000 genomes]
rs62445596	1.00[EUR][1000 genomes]
rs62445597	1.00[EUR][1000 genomes]
rs62445598	1.00[EUR][1000 genomes]
rs62445601	0.94[EUR][1000 genomes]
rs62445602	0.94[EUR][1000 genomes]
rs62445637	0.89[EUR][1000 genomes]
rs62445639	0.81[EUR][1000 genomes]
rs62445641	0.81[EUR][1000 genomes]
rs62445643	0.81[EUR][1000 genomes]
rs62445644	0.81[EUR][1000 genomes]
rs62448673	0.89[EUR][1000 genomes]
rs62448674	0.89[EUR][1000 genomes]
rs62448676	0.89[EUR][1000 genomes]
rs7785675	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14675000-14679600	Enhancers	Liver	Liver
2	chr7:14678200-14679600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr7:14678200-14680400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:14678800-14680000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr7:14678800-14680400	Enhancers	HMEC	breast
6	chr7:14679000-14679800	Enhancers	NHEK	skin
7	chr7:14679000-14680200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:14679000-14680200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:14679000-14680200	Enhancers	Stomach Mucosa	stomach
10	chr7:14679200-14683200	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links