Variant report
| Variant | rs16878256 |
|---|---|
| Chromosome Location | chr7:14707197-14707198 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10236080 | 0.86[EUR][1000 genomes] |
| rs16878247 | 0.89[EUR][1000 genomes] |
| rs16878249 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17168328 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17168330 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17606722 | 1.00[AFR][1000 genomes] |
| rs17668238 | 1.00[AFR][1000 genomes] |
| rs17668488 | 1.00[AFR][1000 genomes] |
| rs17669620 | 1.00[AFR][1000 genomes] |
| rs17669724 | 1.00[AFR][1000 genomes] |
| rs62445594 | 0.89[EUR][1000 genomes] |
| rs62445596 | 0.89[EUR][1000 genomes] |
| rs62445597 | 0.89[EUR][1000 genomes] |
| rs62445598 | 0.89[EUR][1000 genomes] |
| rs62445601 | 0.84[EUR][1000 genomes] |
| rs62445602 | 0.84[EUR][1000 genomes] |
| rs62445637 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62445639 | 0.90[EUR][1000 genomes] |
| rs62445640 | 0.86[EUR][1000 genomes] |
| rs62445641 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62445643 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62445644 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62448673 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62448674 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62448676 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7785675 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031041 | chr7:14624127-14999201 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv538741 | chr7:14624127-14999201 | Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv1015777 | chr7:14661754-14730811 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3362199 | chr7:14684761-14707777 | ZNF genes & repeats Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14704200-14736000 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 2 | chr7:14706400-14712000 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
