Variant report

Variant	rs17668488
Chromosome Location	chr7:14727413-14727414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16878249	1.00[AFR][1000 genomes]
rs16878256	1.00[AFR][1000 genomes]
rs17168328	1.00[AFR][1000 genomes]
rs17168330	1.00[AFR][1000 genomes]
rs17605513	1.00[CEU][hapmap]
rs17606722	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17668059	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17668238	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17669620	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs17669724	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs62445637	1.00[AFR][1000 genomes]
rs62448673	1.00[AFR][1000 genomes]
rs62448674	1.00[AFR][1000 genomes]
rs62448676	1.00[AFR][1000 genomes]
rs73680180	1.00[EUR][1000 genomes]
rs9986817	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14704200-14736000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14712800-14775200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:14720800-14728400	Weak transcription	Brain Angular Gyrus	brain
4	chr7:14725600-14727600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:14726800-14728200	Enhancers	Osteobl	bone
6	chr7:14727200-14727800	Enhancers	HUVEC	blood vessel
7	chr7:14727400-14727800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:14727400-14728000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:14727400-14728000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:14727400-14728400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr7:14727400-14728400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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