Variant report

Variant	rs16878383
Chromosome Location	chr5:80358675-80358676
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:80357227..80360103-chr5:80369290..80370908,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10058312	1.00[ASN][1000 genomes]
rs16878353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878437	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16878457	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs16878460	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs16878461	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs16878472	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2068624	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4704701	1.00[YRI][hapmap]
rs56654359	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6897350	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73766182	1.00[EUR][1000 genomes]
rs73766183	1.00[EUR][1000 genomes]
rs73766184	1.00[EUR][1000 genomes]
rs73766185	1.00[EUR][1000 genomes]
rs7720624	1.00[CEU][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv830358	chr5:80197105-80358920	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv830360	chr5:80283278-80446040	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80319600-80374200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr5:80337200-80368600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:80338200-80370600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:80338200-80376200	Weak transcription	NHLF	lung
5	chr5:80339200-80368600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:80339800-80374200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr5:80341400-80360000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr5:80343200-80366000	Weak transcription	Adipose Nuclei	Adipose
9	chr5:80343200-80394400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:80344400-80368800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:80344800-80382600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:80346400-80359800	Weak transcription	Left Ventricle	heart
13	chr5:80346400-80364800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr5:80346400-80365800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:80346600-80367000	Weak transcription	Brain Angular Gyrus	brain
16	chr5:80347800-80359800	Weak transcription	Primary T cells from cord blood	blood
17	chr5:80353600-80375400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr5:80354200-80382400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:80354400-80367800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:80356200-80359800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr5:80356200-80370400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr5:80356400-80359800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:80356600-80359200	Weak transcription	HepG2	liver
24	chr5:80356600-80374600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr5:80357600-80360000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr5:80357800-80359800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:80357800-80365800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links