The 2.0 version of rSNPBase

Variant report

Variant rs16878417
Chromosome Location chr5:80378466-80378467
allele A/C/G
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80343200-80394400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr5:80344800-80382600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr5:80354200-80382400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr5:80364200-80384200 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr5:80364200-80386200 Weak transcription H1 Cell Line embryonic stem cell
6 chr5:80364600-80382800 Weak transcription Gastric stomach
7 chr5:80368800-80384200 Strong transcription Primary T cells fromperipheralblood blood
8 chr5:80372000-80379000 Strong transcription Primary T helper naive cells fromperipheralblood blood
9 chr5:80373000-80383600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr5:80373800-80393600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr5:80374400-80384800 Strong transcription HepG2 liver
12 chr5:80374800-80382600 Weak transcription Fetal Intestine Large intestine
13 chr5:80375000-80382400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr5:80375000-80382800 Weak transcription Fetal Intestine Small intestine
15 chr5:80375000-80382800 Weak transcription Spleen Spleen
16 chr5:80375000-80384400 Strong transcription Primary T cells from cord blood blood
17 chr5:80375000-80384400 Weak transcription Duodenum Mucosa Duodenum
18 chr5:80375000-80422600 Weak transcription Left Ventricle heart
19 chr5:80375200-80382800 Weak transcription HUES64 Cell Line embryonic stem cell
20 chr5:80375200-80382800 Weak transcription Aorta Aorta
21 chr5:80375200-80401000 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr5:80375400-80382800 Weak transcription Lung lung
23 chr5:80375400-80385600 Strong transcription Primary T helper cells fromperipheralblood blood
24 chr5:80375600-80384600 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr5:80375600-80393600 Weak transcription HUES6 Cell Line embryonic stem cell
26 chr5:80375800-80400400 Weak transcription Primary T killer memory cells from peripheral blood blood
27 chr5:80376000-80378800 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr5:80376200-80378800 Enhancers Brain Substantia Nigra brain
29 chr5:80376200-80379000 Enhancers Brain Angular Gyrus brain
30 chr5:80376800-80382200 Weak transcription HUES48 Cell Line embryonic stem cell
31 chr5:80376800-80382600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr5:80376800-80388400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
33 chr5:80377000-80401000 Weak transcription Primary T regulatory cells fromperipheralblood blood
34 chr5:80377200-80381800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
35 chr5:80377200-80382400 Weak transcription ES-I3 Cell Line embryonic stem cell
36 chr5:80377200-80382600 Weak transcription H9 Cell Line embryonic stem cell
37 chr5:80377200-80382600 Weak transcription NHLF lung
38 chr5:80377200-80384000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr5:80377400-80381600 Weak transcription Adipose Nuclei Adipose
40 chr5:80377600-80378800 Enhancers Brain Inferior Temporal Lobe brain
41 chr5:80377600-80379800 Enhancers Brain Cingulate Gyrus brain
42 chr5:80377600-80379800 Enhancers Brain Hippocampus Middle brain
43 chr5:80377600-80380600 Weak transcription Primary T helper cells PMA-I stimulated --
44 chr5:80377600-80381200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr5:80377600-80381400 Weak transcription Primary T killer naive cells fromperipheralblood blood
46 chr5:80377600-80381800 Weak transcription Primary T helper naive cells from peripheral blood blood
47 chr5:80377600-80382600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
48 chr5:80377600-80382800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
49 chr5:80377600-80384400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr5:80377600-80389800 Weak transcription Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015