Variant report

Variant	rs16878738
Chromosome Location	chr6:16675191-16675192
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:16673497..16675626-chr6:16697435..16700638,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10484365	1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.91[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12194553	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196135	1.00[TSI][hapmap]
rs17669102	1.00[CHD][hapmap]
rs2209026	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327995	1.00[CHD][hapmap]
rs6923746	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825589	1.00[ASN][1000 genomes]
rs73367677	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367924	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16662200-16684000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:16662200-16684000	Weak transcription	Placenta	Placenta
3	chr6:16662200-16685200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:16662200-16699600	Weak transcription	Fetal Intestine Large	intestine
5	chr6:16662400-16699600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:16669600-16685200	Weak transcription	Fetal Kidney	kidney
7	chr6:16669800-16677200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:16670200-16676000	Enhancers	Liver	Liver
9	chr6:16670400-16683600	Weak transcription	Small Intestine	intestine
10	chr6:16670600-16675200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:16670600-16675200	Weak transcription	Spleen	Spleen
12	chr6:16670600-16677200	Weak transcription	Right Atrium	heart
13	chr6:16670600-16681400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:16670600-16681800	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:16670800-16685200	Weak transcription	Primary T cells from cord blood	blood
16	chr6:16671000-16684000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:16671200-16683800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:16671400-16681200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:16671400-16694800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:16671600-16680800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:16671600-16681400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:16671600-16681800	Weak transcription	Fetal Brain Male	brain
23	chr6:16671800-16680200	Weak transcription	Primary B cells from cord blood	blood
24	chr6:16671800-16687600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr6:16672000-16681400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:16672400-16677200	Weak transcription	Brain Germinal Matrix	brain
27	chr6:16672400-16680800	Weak transcription	HMEC	breast
28	chr6:16672600-16677000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:16672600-16677200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr6:16672600-16684200	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:16672600-16685600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:16672800-16675200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:16672800-16675400	Enhancers	Left Ventricle	heart
34	chr6:16672800-16677000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:16672800-16681800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:16672800-16683800	Weak transcription	Psoas Muscle	Psoas
37	chr6:16673000-16677000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:16673000-16677000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr6:16673000-16677200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr6:16673000-16677200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:16673000-16677400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:16673000-16684000	Weak transcription	Right Ventricle	heart
43	chr6:16673200-16681000	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr6:16673200-16700400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:16673400-16676800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:16673600-16676000	Enhancers	Brain Hippocampus Middle	brain
47	chr6:16673800-16677400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:16674000-16676000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:16674000-16678200	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr6:16674200-16675200	Weak transcription	Ovary	ovary

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