Variant report

Variant	rs72825589
Chromosome Location	chr6:16672884-16672885
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10484365	1.00[ASN][1000 genomes]
rs12194553	1.00[ASN][1000 genomes]
rs16878738	1.00[ASN][1000 genomes]
rs2209026	1.00[ASN][1000 genomes]
rs6923746	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367677	1.00[ASN][1000 genomes]
rs9367924	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16653800-16675000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:16662200-16684000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:16662200-16684000	Weak transcription	Placenta	Placenta
4	chr6:16662200-16685200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:16662200-16699600	Weak transcription	Fetal Intestine Large	intestine
6	chr6:16662400-16699600	Weak transcription	Fetal Intestine Small	intestine
7	chr6:16667400-16674400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:16667800-16673200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:16669200-16673000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:16669200-16674400	Enhancers	HepG2	liver
11	chr6:16669400-16673400	Enhancers	Colon Smooth Muscle	Colon
12	chr6:16669600-16685200	Weak transcription	Fetal Kidney	kidney
13	chr6:16669800-16674000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:16669800-16674800	Weak transcription	HSMMtube	muscle
15	chr6:16669800-16677200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:16670200-16676000	Enhancers	Liver	Liver
17	chr6:16670400-16673000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr6:16670400-16674800	Weak transcription	HSMM	muscle
19	chr6:16670400-16683600	Weak transcription	Small Intestine	intestine
20	chr6:16670600-16673000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:16670600-16673200	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr6:16670600-16674800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:16670600-16674800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:16670600-16675000	Weak transcription	Aorta	Aorta
25	chr6:16670600-16675000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:16670600-16675200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:16670600-16675200	Weak transcription	Spleen	Spleen
28	chr6:16670600-16677200	Weak transcription	Right Atrium	heart
29	chr6:16670600-16681400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:16670600-16681800	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:16670800-16673200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:16670800-16673800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:16670800-16674400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:16670800-16674800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr6:16670800-16674800	Weak transcription	HUVEC	blood vessel
36	chr6:16670800-16674800	Weak transcription	Osteobl	bone
37	chr6:16670800-16675000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:16670800-16675000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:16670800-16685200	Weak transcription	Primary T cells from cord blood	blood
40	chr6:16671000-16674600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:16671000-16675000	Weak transcription	NH-A	brain
42	chr6:16671000-16684000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:16671200-16673400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr6:16671200-16675000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr6:16671200-16683800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr6:16671400-16674200	Enhancers	Ovary	ovary
47	chr6:16671400-16675000	Weak transcription	Brain Angular Gyrus	brain
48	chr6:16671400-16681200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr6:16671400-16694800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr6:16671600-16673000	Enhancers	HUES6 Cell Line	embryonic stem cell

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