Variant report

Variant	rs16878987
Chromosome Location	chr5:7691571-7691572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10474818	1.00[EUR][1000 genomes]
rs10475389	1.00[EUR][1000 genomes]
rs16878974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2195395	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41332447	1.00[AMR][1000 genomes]
rs4235584	1.00[EUR][1000 genomes]
rs4701792	1.00[EUR][1000 genomes]
rs58196482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6555489	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv949492	chr5:7682909-7953909	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:7664600-7709200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:7678000-7709200	Weak transcription	Aorta	Aorta
3	chr5:7678400-7705400	Weak transcription	Psoas Muscle	Psoas
4	chr5:7679400-7704600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:7679400-7705600	Weak transcription	Fetal Brain Male	brain
6	chr5:7682600-7692200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:7683400-7697800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr5:7684000-7696200	Weak transcription	Colon Smooth Muscle	Colon
9	chr5:7685600-7693200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:7685600-7693400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:7686000-7694600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:7686000-7705200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:7688000-7743200	Weak transcription	Brain Substantia Nigra	brain
14	chr5:7688600-7705400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr5:7689400-7704200	Weak transcription	Ovary	ovary
16	chr5:7689800-7698200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:7689800-7705000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:7690200-7695400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr5:7690600-7718600	Weak transcription	Brain Anterior Caudate	brain
20	chr5:7690800-7691800	Strong transcription	Fetal Stomach	stomach
21	chr5:7690800-7692000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:7690800-7696600	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr5:7691000-7692200	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr5:7691200-7719000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:7691200-7722200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:7691400-7697200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr5:7691400-7705400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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