Variant report

Variant	rs58196482
Chromosome Location	chr5:7687671-7687672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10474818	1.00[EUR][1000 genomes]
rs10475389	1.00[EUR][1000 genomes]
rs16878974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2195395	1.00[AMR][1000 genomes]
rs41332447	1.00[AMR][1000 genomes]
rs4235584	1.00[EUR][1000 genomes]
rs4701792	1.00[EUR][1000 genomes]
rs6555489	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv537633	chr5:7667425-7688961	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv949492	chr5:7682909-7953909	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:7664600-7709200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:7678000-7709200	Weak transcription	Aorta	Aorta
3	chr5:7678400-7705400	Weak transcription	Psoas Muscle	Psoas
4	chr5:7679400-7704600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:7679400-7705600	Weak transcription	Fetal Brain Male	brain
6	chr5:7680600-7690800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr5:7680600-7691000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr5:7682600-7692200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:7683400-7697800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr5:7684000-7696200	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:7685200-7690800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:7685600-7693200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:7685600-7693400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:7686000-7690800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:7686000-7691200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:7686000-7694600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:7686000-7705200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr5:7687200-7690800	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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