Variant report

Variant	rs16879213
Chromosome Location	chr6:16801324-16801325
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:16766776..16769297-chr6:16800813..16803719,2	MCF-7	breast:
2	chr6:16786716..16790041-chr6:16799829..16802496,3	MCF-7	breast:
3	chr6:16794135..16797092-chr6:16800153..16802754,2	MCF-7	breast:
4	chr6:16770036..16772841-chr6:16799058..16801762,2	MCF-7	breast:
5	chr6:16761500..16763010-chr6:16800214..16802206,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124788	Chromatin interaction
ENSG00000229931	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3812217	1.00[TSI][hapmap]
rs479736	0.84[ASN][1000 genomes]
rs607341	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs61213482	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs615823	0.84[ASN][1000 genomes]
rs675934	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs72827847	0.88[ASN][1000 genomes]
rs9358103	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16799600-16801400	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr6:16799600-16801400	Enhancers	Hela-S3	cervix
3	chr6:16799600-16802800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:16799600-16802800	Enhancers	NHDF-Ad	bronchial
5	chr6:16799600-16804400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:16799600-16809200	Enhancers	HepG2	liver
7	chr6:16799800-16802200	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:16799800-16802800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:16799800-16802800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:16799800-16803000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:16800000-16801400	Weak transcription	Right Ventricle	heart
12	chr6:16800000-16803400	Weak transcription	Brain Germinal Matrix	brain
13	chr6:16800200-16801400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:16800200-16802000	Weak transcription	NH-A	brain
15	chr6:16800200-16802600	Weak transcription	Left Ventricle	heart
16	chr6:16800200-16803200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:16800200-16805600	Weak transcription	HSMMtube	muscle
18	chr6:16800400-16803600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:16800600-16801400	Flanking Active TSS	A549	lung
20	chr6:16800600-16801800	Enhancers	NHLF	lung
21	chr6:16800600-16802200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr6:16800600-16803000	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:16800600-16803400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr6:16801000-16801600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:16801000-16802000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:16801000-16802800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:16801000-16803200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:16801200-16801600	Enhancers	Fetal Heart	heart
29	chr6:16801200-16801600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr6:16801200-16802000	Weak transcription	Brain Anterior Caudate	brain
31	chr6:16801200-16803400	Weak transcription	Right Atrium	heart

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