Variant report

Variant	rs9358103
Chromosome Location	chr6:16738125-16738126
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:16737427..16739533-chr6:16748799..16751565,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124788	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10434861	0.89[CHD][hapmap];0.93[JPT][hapmap]
rs16879213	1.00[TSI][hapmap]
rs2073515	1.00[AFR][1000 genomes]
rs3812217	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6459484	0.89[CHD][hapmap];0.93[JPT][hapmap]
rs6915772	0.81[JPT][hapmap]
rs9350015	0.85[CHD][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16706400-16742600	Weak transcription	Pancreas	Pancrea
2	chr6:16713800-16747800	Weak transcription	Brain Germinal Matrix	brain
3	chr6:16720200-16747800	Weak transcription	Fetal Brain Male	brain
4	chr6:16722600-16739600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:16724800-16739800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:16726200-16739800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:16726600-16739600	Weak transcription	Ovary	ovary
8	chr6:16728800-16741000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:16728800-16744400	Weak transcription	Lung	lung
10	chr6:16729200-16742600	Weak transcription	Gastric	stomach
11	chr6:16730000-16739600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:16730400-16739800	Weak transcription	Spleen	Spleen
13	chr6:16730600-16739800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:16731600-16746000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:16732000-16745600	Weak transcription	Primary T cells from cord blood	blood
16	chr6:16732200-16746800	Weak transcription	Hela-S3	cervix
17	chr6:16732200-16754800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:16732400-16739400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:16732400-16744400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:16732600-16748000	Weak transcription	Colonic Mucosa	Colon
21	chr6:16733400-16739600	Weak transcription	Fetal Intestine Large	intestine
22	chr6:16733400-16741200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr6:16733400-16741200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:16733400-16741400	Weak transcription	GM12878-XiMat	blood
25	chr6:16733600-16739400	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:16733800-16739600	Weak transcription	Psoas Muscle	Psoas
27	chr6:16734400-16739400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:16734600-16739600	Weak transcription	Right Atrium	heart
29	chr6:16734600-16740200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:16735200-16738600	Enhancers	HepG2	liver
31	chr6:16736200-16738800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:16736200-16739800	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr6:16736200-16740600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr6:16736400-16738200	Enhancers	Stomach Mucosa	stomach
35	chr6:16736400-16739000	Enhancers	Brain Hippocampus Middle	brain
36	chr6:16736600-16739800	Enhancers	Adipose Nuclei	Adipose
37	chr6:16736600-16740000	Enhancers	Rectal Smooth Muscle	rectum
38	chr6:16736600-16740400	Enhancers	Brain Angular Gyrus	brain
39	chr6:16736800-16738200	Enhancers	Fetal Kidney	kidney
40	chr6:16736800-16738400	Enhancers	Liver	Liver
41	chr6:16736800-16738600	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr6:16736800-16738600	Enhancers	Fetal Heart	heart
43	chr6:16736800-16738600	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr6:16736800-16738600	Enhancers	Right Ventricle	heart
45	chr6:16736800-16738600	Enhancers	Small Intestine	intestine
46	chr6:16736800-16738600	Flanking Active TSS	HUVEC	blood vessel
47	chr6:16736800-16739200	Enhancers	Fetal Stomach	stomach
48	chr6:16736800-16739400	Enhancers	HSMMtube	muscle
49	chr6:16736800-16739600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:16736800-16739600	Enhancers	Fetal Lung	lung

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