Variant report

Variant	rs9350015
Chromosome Location	chr6:16708926-16708927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10434861	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10456788	1.00[CEU][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs10456789	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10456790	1.00[CEU][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs10456791	0.84[EUR][1000 genomes]
rs10949379	0.84[EUR][1000 genomes]
rs12194640	0.86[CEU][hapmap]
rs16878970	1.00[CEU][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs16879003	1.00[CEU][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs3806144	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs3812217	0.81[CHD][hapmap];0.93[JPT][hapmap]
rs6459484	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6915772	0.90[JPT][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9358103	0.85[CHD][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16701000-16713400	Weak transcription	Brain Germinal Matrix	brain
2	chr6:16703800-16709200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:16704800-16712200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:16705000-16709000	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:16705000-16709000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:16705200-16712600	Weak transcription	Psoas Muscle	Psoas
7	chr6:16705400-16710400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:16705400-16712600	Weak transcription	Ovary	ovary
9	chr6:16705400-16713000	Weak transcription	Fetal Stomach	stomach
10	chr6:16705400-16719800	Weak transcription	Aorta	Aorta
11	chr6:16705400-16722200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:16705600-16711200	Weak transcription	A549	lung
13	chr6:16705600-16712200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:16705800-16712200	Weak transcription	Osteobl	bone
15	chr6:16706000-16711200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:16706000-16712600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:16706000-16712800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:16706200-16712600	Weak transcription	Fetal Lung	lung
19	chr6:16706200-16730600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:16706400-16710800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:16706400-16712000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:16706400-16712200	Weak transcription	Gastric	stomach
23	chr6:16706400-16712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:16706400-16712600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:16706400-16712600	Weak transcription	Right Atrium	heart
26	chr6:16706400-16712600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:16706400-16713200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:16706400-16713800	Weak transcription	Left Ventricle	heart
29	chr6:16706400-16717600	Weak transcription	Esophagus	oesophagus
30	chr6:16706400-16722200	Weak transcription	Lung	lung
31	chr6:16706400-16742600	Weak transcription	Pancreas	Pancrea
32	chr6:16706600-16711200	Weak transcription	Stomach Mucosa	stomach
33	chr6:16706600-16711400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:16706600-16712600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:16706600-16712600	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:16706800-16712600	Weak transcription	Brain Anterior Caudate	brain
37	chr6:16707000-16712600	Weak transcription	Fetal Intestine Small	intestine
38	chr6:16707200-16712800	Weak transcription	Liver	Liver
39	chr6:16707600-16712000	Weak transcription	HepG2	liver
40	chr6:16707800-16711400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:16707800-16711800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:16707800-16712000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:16707800-16712200	Weak transcription	NHLF	lung
44	chr6:16708000-16711000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr6:16708000-16711200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:16708000-16711200	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr6:16708000-16711200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:16708000-16711200	Weak transcription	HMEC	breast
49	chr6:16708000-16711200	Weak transcription	HUVEC	blood vessel
50	chr6:16708000-16711200	Weak transcription	NHEK	skin

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