Variant report

Variant	rs2073515
Chromosome Location	chr6:16659161-16659162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:16658089..16660034-chr6:16661443..16663086,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10949374	0.89[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2073513	0.90[ASN][1000 genomes]
rs3793100	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs3812217	1.00[AFR][1000 genomes]
rs3828864	0.92[ASN][1000 genomes]
rs719315	0.87[ASN][1000 genomes]
rs9358103	1.00[AFR][1000 genomes]
rs9370920	0.80[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16584000-16670000	Weak transcription	Fetal Brain Male	brain
2	chr6:16636800-16661800	Weak transcription	Right Ventricle	heart
3	chr6:16636800-16667400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:16636800-16669400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:16636800-16672600	Weak transcription	Gastric	stomach
6	chr6:16640000-16659800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:16640200-16661600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:16640400-16661800	Weak transcription	NHLF	lung
9	chr6:16641800-16670400	Weak transcription	Fetal Brain Female	brain
10	chr6:16645600-16661800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:16647000-16670000	Weak transcription	Pancreas	Pancrea
12	chr6:16648600-16660400	Weak transcription	Small Intestine	intestine
13	chr6:16650000-16661600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:16650000-16661600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:16651800-16661000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:16652000-16662200	Weak transcription	Brain Germinal Matrix	brain
17	chr6:16652600-16660000	Weak transcription	Stomach Mucosa	stomach
18	chr6:16652600-16661800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:16652800-16659800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:16653000-16661600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:16653000-16669400	Weak transcription	Thymus	Thymus
22	chr6:16653400-16660000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:16653600-16661800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:16653800-16661800	Weak transcription	Esophagus	oesophagus
25	chr6:16653800-16661800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:16653800-16661800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:16653800-16675000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:16654000-16662200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:16654200-16659400	Weak transcription	Lung	lung
30	chr6:16654200-16660600	Enhancers	Primary T cells fromperipheralblood	blood
31	chr6:16654200-16661800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:16654200-16661800	Weak transcription	Aorta	Aorta
33	chr6:16654200-16661800	Weak transcription	NHEK	skin
34	chr6:16654400-16659600	Weak transcription	Spleen	Spleen
35	chr6:16654600-16661800	Weak transcription	Psoas Muscle	Psoas
36	chr6:16655600-16659400	Weak transcription	Fetal Lung	lung
37	chr6:16655800-16661600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:16655800-16667800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:16656000-16667400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:16656400-16661800	Weak transcription	Fetal Intestine Small	intestine
41	chr6:16656600-16659200	Weak transcription	Colon Smooth Muscle	Colon
42	chr6:16656800-16660800	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr6:16657000-16661800	Weak transcription	Fetal Muscle Leg	muscle
44	chr6:16657200-16661600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:16657200-16661800	Weak transcription	Adipose Nuclei	Adipose
46	chr6:16657400-16660800	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr6:16657400-16661600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:16657400-16661800	Weak transcription	Fetal Intestine Large	intestine
49	chr6:16657600-16659200	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr6:16657600-16659200	Enhancers	Brain Substantia Nigra	brain

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