Variant report

Variant	rs9370920
Chromosome Location	chr6:16692186-16692187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:16685801..16692739-chr6:16758144..16765867,9	MCF-7	breast:
2	chr6:16690690..16692663-chr6:16705103..16707312,2	MCF-7	breast:
3	chr6:16690192..16694022-chr6:16694916..16700279,9	MCF-7	breast:
4	chr6:16689945..16693267-chr6:16693854..16696294,3	K562	blood:
5	chr6:16690235..16693001-chr6:16757238..16760223,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229931	Chromatin interaction
ENSG00000124788	Chromatin interaction
ENSG00000272341	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2073515	0.80[CHD][hapmap]
rs3793100	0.86[JPT][hapmap]
rs3812196	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16662200-16699600	Weak transcription	Fetal Intestine Large	intestine
2	chr6:16662400-16699600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:16671400-16694800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:16673200-16700400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:16678000-16700400	Weak transcription	Ovary	ovary
6	chr6:16681800-16693000	Weak transcription	Gastric	stomach
7	chr6:16684400-16693000	Weak transcription	Spleen	Spleen
8	chr6:16684400-16695200	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:16684600-16695000	Weak transcription	Right Ventricle	heart
10	chr6:16684800-16698000	Weak transcription	Fetal Stomach	stomach
11	chr6:16685000-16700800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:16685400-16695000	Weak transcription	Right Atrium	heart
13	chr6:16685400-16697800	Weak transcription	Liver	Liver
14	chr6:16685600-16697800	Weak transcription	Fetal Lung	lung
15	chr6:16685600-16699800	Weak transcription	Primary T cells from cord blood	blood
16	chr6:16685800-16695200	Weak transcription	Psoas Muscle	Psoas
17	chr6:16687000-16692600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:16687200-16692200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:16688200-16694800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:16688200-16697400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr6:16688400-16693000	Weak transcription	Stomach Mucosa	stomach
22	chr6:16688800-16695400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:16688800-16697200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:16689400-16695000	Weak transcription	Brain Angular Gyrus	brain
25	chr6:16689400-16695000	Weak transcription	Fetal Heart	heart
26	chr6:16689400-16697200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:16689600-16698000	Weak transcription	HSMMtube	muscle
28	chr6:16689800-16697800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr6:16690000-16692200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:16690000-16697600	Weak transcription	HSMM	muscle
31	chr6:16690200-16692200	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr6:16690400-16692200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr6:16690400-16692200	Enhancers	Hela-S3	cervix
34	chr6:16690400-16692400	Enhancers	HepG2	liver
35	chr6:16690400-16693000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr6:16690600-16692200	Enhancers	Brain Anterior Caudate	brain
37	chr6:16690600-16692200	Flanking Active TSS	GM12878-XiMat	blood
38	chr6:16690600-16693400	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr6:16690600-16698000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:16690600-16699600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr6:16690800-16692400	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr6:16690800-16692600	Enhancers	Primary T cells fromperipheralblood	blood
43	chr6:16690800-16695000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:16691000-16692200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:16691000-16695200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:16691000-16700400	Weak transcription	Fetal Brain Male	brain
47	chr6:16691200-16693200	Weak transcription	Lung	lung
48	chr6:16691200-16695000	Weak transcription	Colon Smooth Muscle	Colon
49	chr6:16691200-16695200	Weak transcription	Esophagus	oesophagus
50	chr6:16691200-16695200	Weak transcription	Left Ventricle	heart

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