Variant report

Variant	rs16879234
Chromosome Location	chr6:49310630-49310631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12204664	0.86[AFR][1000 genomes]
rs16878827	0.86[AFR][1000 genomes]
rs16878910	0.86[AFR][1000 genomes]
rs16878928	0.86[AFR][1000 genomes]
rs73423812	1.00[AFR][1000 genomes]
rs73423820	1.00[AFR][1000 genomes]
rs73423827	1.00[AFR][1000 genomes]
rs73423833	1.00[AFR][1000 genomes]
rs73423845	1.00[AFR][1000 genomes]
rs73423857	0.87[AFR][1000 genomes]
rs73423861	1.00[AFR][1000 genomes]
rs73423865	1.00[AFR][1000 genomes]
rs73431754	0.86[AFR][1000 genomes]
rs73431760	0.86[AFR][1000 genomes]
rs73431763	0.86[AFR][1000 genomes]
rs73431779	0.86[AFR][1000 genomes]
rs73431781	0.86[AFR][1000 genomes]
rs73433617	0.86[AFR][1000 genomes]
rs73441611	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024959	chr6:49290141-49652124	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1021136	chr6:49295037-49631278	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49308400-49311000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr6:49308800-49311200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:49309000-49311000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:49309200-49311000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:49309400-49310800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:49309400-49311000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:49310000-49311000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:49310200-49310800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr6:49310200-49310800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:49310200-49311000	Enhancers	HMEC	breast
11	chr6:49310200-49311000	Enhancers	NHEK	skin
12	chr6:49310400-49310800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr6:49310400-49310800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:49310400-49311000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:49310600-49311000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:49310600-49311600	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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