Variant report

Variant	rs16878910
Chromosome Location	chr6:49190449-49190450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12204664	1.00[AFR][1000 genomes]
rs16878827	1.00[AFR][1000 genomes]
rs16878928	1.00[AFR][1000 genomes]
rs16879234	0.86[AFR][1000 genomes]
rs58539422	0.86[AFR][1000 genomes]
rs58798143	0.86[AFR][1000 genomes]
rs73423812	0.86[AFR][1000 genomes]
rs73423820	0.86[AFR][1000 genomes]
rs73423827	0.86[AFR][1000 genomes]
rs73423833	0.86[AFR][1000 genomes]
rs73423845	0.86[AFR][1000 genomes]
rs73423861	0.86[AFR][1000 genomes]
rs73423865	0.86[AFR][1000 genomes]
rs73431704	0.86[AFR][1000 genomes]
rs73431754	1.00[AFR][1000 genomes]
rs73431760	1.00[AFR][1000 genomes]
rs73431763	1.00[AFR][1000 genomes]
rs73431779	1.00[AFR][1000 genomes]
rs73431781	1.00[AFR][1000 genomes]
rs73433617	1.00[AFR][1000 genomes]
rs73441611	1.00[AFR][1000 genomes]
rs73474736	0.86[AFR][1000 genomes]
rs73474742	0.86[AFR][1000 genomes]
rs73474754	0.86[AFR][1000 genomes]
rs73485262	0.86[AFR][1000 genomes]
rs73485274	0.86[AFR][1000 genomes]
rs73485282	0.86[AFR][1000 genomes]
rs73485291	0.86[AFR][1000 genomes]
rs73485293	0.86[AFR][1000 genomes]
rs73485294	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2755862	chr6:49081541-49298041	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49186600-49205600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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