Variant report

Variant	rs58798143
Chromosome Location	chr6:49116228-49116229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12204664	0.86[AFR][1000 genomes]
rs16878827	0.86[AFR][1000 genomes]
rs16878910	0.86[AFR][1000 genomes]
rs16878928	0.86[AFR][1000 genomes]
rs58539422	1.00[AFR][1000 genomes]
rs73431704	1.00[AFR][1000 genomes]
rs73431754	0.86[AFR][1000 genomes]
rs73431760	0.86[AFR][1000 genomes]
rs73431763	0.86[AFR][1000 genomes]
rs73431779	0.86[AFR][1000 genomes]
rs73431781	0.86[AFR][1000 genomes]
rs73433617	0.86[AFR][1000 genomes]
rs73441611	0.86[AFR][1000 genomes]
rs73474732	0.87[AFR][1000 genomes]
rs73474736	1.00[AFR][1000 genomes]
rs73474742	1.00[AFR][1000 genomes]
rs73474754	1.00[AFR][1000 genomes]
rs73485262	1.00[AFR][1000 genomes]
rs73485274	1.00[AFR][1000 genomes]
rs73485282	1.00[AFR][1000 genomes]
rs73485291	1.00[AFR][1000 genomes]
rs73485293	1.00[AFR][1000 genomes]
rs73485294	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603049	chr6:48931959-49169337	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2755862	chr6:49081541-49298041	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49112000-49122600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links