Variant report

Variant	rs16879289
Chromosome Location	chr6:88127101-88127102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs190262	0.86[JPT][hapmap]
rs2179845	1.00[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap]
rs450712	0.86[JPT][hapmap]
rs6906734	0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs6910541	0.86[JPT][hapmap]
rs6922674	0.82[CHB][hapmap]
rs6924641	0.91[CEU][hapmap]
rs7742293	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs7753275	0.91[CEU][hapmap];0.80[CHB][hapmap]
rs7760237	0.91[CEU][hapmap];0.80[CHB][hapmap]
rs8802	0.91[CEU][hapmap];0.80[CHB][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs9450684	1.00[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv3349730	chr6:88126717-88127156	Inactive region	Chromatin interactive region	n/a	n/a	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs16879289	C6orf165	cis	parietal	SCAN
rs16879289	SRSF12	cis	parietal	SCAN
rs16879289	PRSS35	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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