Variant report

Variant	rs6910541
Chromosome Location	chr6:87969480-87969481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10085214	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11753770	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16879289	0.86[JPT][hapmap]
rs190262	1.00[JPT][hapmap];0.86[YRI][hapmap]
rs2179845	1.00[JPT][hapmap]
rs35025386	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs450712	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs62439538	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7742293	1.00[JPT][hapmap]
rs9444487	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9450632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes]
rs9450684	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87948800-87971200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:87949600-87970200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:87950400-87970600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:87950400-87971400	Strong transcription	Dnd41	blood
5	chr6:87954200-87970000	Strong transcription	Fetal Muscle Trunk	muscle
6	chr6:87956800-87971800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:87957000-87970400	Strong transcription	Placenta	Placenta
8	chr6:87957000-87971600	Weak transcription	Gastric	stomach
9	chr6:87957200-87981000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:87959200-87969800	Weak transcription	Spleen	Spleen
11	chr6:87960400-87969600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:87961000-87971600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:87962200-87970400	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:87962200-87970600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:87962200-87970600	Strong transcription	Fetal Thymus	thymus
16	chr6:87962200-87971200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:87962400-87970400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:87962600-87970000	Strong transcription	Primary B cells from cord blood	blood
19	chr6:87962800-87970200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:87963000-87970200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:87963200-87970600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:87963800-87970000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:87964000-87970800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
24	chr6:87964000-87971400	Strong transcription	HSMM	muscle
25	chr6:87964200-87970200	Strong transcription	HUVEC	blood vessel
26	chr6:87964200-87970400	Strong transcription	Fetal Brain Male	brain
27	chr6:87964200-87970400	Strong transcription	NH-A	brain
28	chr6:87964200-87970600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:87964400-87970200	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr6:87964400-87970600	Strong transcription	Fetal Brain Female	brain
31	chr6:87964400-87970600	Strong transcription	Fetal Kidney	kidney
32	chr6:87964600-87970400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:87965400-87970200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:87965600-87970600	Strong transcription	Fetal Heart	heart
35	chr6:87965800-87970000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:87965800-87970600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
37	chr6:87966200-87969600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:87966200-87971800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:87966200-87977200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:87966400-87976400	Weak transcription	Brain Angular Gyrus	brain
41	chr6:87966400-87989200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr6:87966600-87970600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr6:87966800-87971200	Weak transcription	A549	lung
44	chr6:87967000-87970800	Strong transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr6:87967000-87976000	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:87967200-87970200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr6:87967400-87969600	Weak transcription	Brain Anterior Caudate	brain
48	chr6:87967400-87969600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr6:87967400-87969800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:87967600-87983000	Weak transcription	Esophagus	oesophagus

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