Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16879691	0.82[AFR][1000 genomes]
rs16879695	0.91[AFR][1000 genomes]
rs16879698	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16879700	0.84[AFR][1000 genomes]
rs16879707	0.94[AFR][1000 genomes]
rs16879729	1.00[EUR][1000 genomes]
rs1839393	0.83[AFR][1000 genomes]
rs2871292	1.00[EUR][1000 genomes]
rs60257594	0.82[AFR][1000 genomes]
rs60512599	0.83[AFR][1000 genomes]
rs73112905	1.00[EUR][1000 genomes]
rs73112911	1.00[EUR][1000 genomes]
rs73114922	1.00[EUR][1000 genomes]
rs73122930	0.91[AFR][1000 genomes]
rs73122933	0.90[AFR][1000 genomes]
rs73122935	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73122938	0.82[AFR][1000 genomes]
rs73122944	0.91[AFR][1000 genomes]
rs73122965	0.88[AFR][1000 genomes]
rs73122967	0.91[AFR][1000 genomes]
rs73122969	0.93[AFR][1000 genomes]
rs73122975	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73124988	1.00[EUR][1000 genomes]
rs73805752	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013877	chr4:27539626-28051576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv878770	chr4:27680483-27844411	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1012113	chr4:27694978-27819838	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv537057	chr4:27694978-27819838	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27712400-27722800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:27719200-27720200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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