Variant report
| Variant | rs73122975 |
|---|---|
| Chromosome Location | chr4:27722961-27722962 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs16879695 | 0.91[AFR][1000 genomes] |
| rs16879698 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16879706 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16879707 | 0.95[AFR][1000 genomes] |
| rs16879729 | 1.00[EUR][1000 genomes] |
| rs1839393 | 0.84[AFR][1000 genomes] |
| rs2871292 | 1.00[EUR][1000 genomes] |
| rs60512599 | 0.84[AFR][1000 genomes] |
| rs73112905 | 1.00[EUR][1000 genomes] |
| rs73112911 | 1.00[EUR][1000 genomes] |
| rs73114922 | 1.00[EUR][1000 genomes] |
| rs73122930 | 0.91[AFR][1000 genomes] |
| rs73122933 | 0.83[AFR][1000 genomes] |
| rs73122935 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73122944 | 0.91[AFR][1000 genomes] |
| rs73122965 | 0.85[AFR][1000 genomes] |
| rs73122967 | 0.88[AFR][1000 genomes] |
| rs73122969 | 0.96[AFR][1000 genomes] |
| rs73124988 | 1.00[EUR][1000 genomes] |
| rs73805752 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013877 | chr4:27539626-28051576 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv878770 | chr4:27680483-27844411 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1012113 | chr4:27694978-27819838 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| 4 | nsv537057 | chr4:27694978-27819838 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:27722800-27723200 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
