Variant report

Variant	rs16879775
Chromosome Location	chr8:110564463-110564464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:110558096..110562827-chr8:110563736..110568570,7	K562	blood:
2	chr8:110429847..110432433-chr8:110563129..110565263,2	K562	blood:
3	chr8:110550646..110556695-chr8:110561304..110567831,11	K562	blood:
4	chr8:110563214..110565678-chr8:110658219..110659984,2	K562	blood:
5	chr8:110358849..110359789-chr8:110563925..110564764,4	K562	blood:
6	chr8:110462866..110463874-chr8:110563606..110564958,17	MCF-7	breast:
7	chr8:110358869..110359791-chr8:110563974..110564851,5	MCF-7	breast:
8	chr8:110550694..110556278-chr8:110557032..110565525,15	MCF-7	breast:
9	chr8:110462733..110464086-chr8:110563917..110564843,7	MCF-7	breast:
10	chr8:110564327..110564840-chr8:110573678..110574481,2	MCF-7	breast:
11	chr8:110551988..110555719-chr8:110561035..110566674,6	K562	blood:
12	chr8:110551256..110553567-chr8:110563249..110565097,2	MCF-7	breast:
13	chr8:110531770..110532745-chr8:110563872..110564774,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction

rs_ID	r²[population]
rs4313129	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60319372	0.93[EUR][1000 genomes]
rs721076	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700647	0.93[EUR][1000 genomes]
rs7819565	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7834070	1.00[CEU][hapmap]
rs7838445	1.00[CEU][hapmap]

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110553000-110565000	Weak transcription	Ovary	ovary
2	chr8:110553000-110565600	Weak transcription	Placenta	Placenta
3	chr8:110553000-110569800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr8:110553000-110569800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:110553000-110570000	Weak transcription	Lung	lung
6	chr8:110553000-110571800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:110553000-110587000	Weak transcription	Esophagus	oesophagus
8	chr8:110553400-110566600	Weak transcription	Fetal Intestine Large	intestine
9	chr8:110553400-110569800	Weak transcription	Osteobl	bone
10	chr8:110553800-110566800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:110553800-110566800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:110553800-110569600	Weak transcription	Fetal Kidney	kidney
13	chr8:110553800-110569800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr8:110553800-110613000	Weak transcription	NHLF	lung
15	chr8:110554000-110565400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:110554000-110565400	Weak transcription	HSMM	muscle
17	chr8:110554000-110565600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:110554000-110565800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:110554000-110566600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:110554000-110567000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr8:110554000-110567000	Weak transcription	NH-A	brain
22	chr8:110554000-110567800	Weak transcription	Fetal Thymus	thymus
23	chr8:110554000-110569400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:110554000-110569600	Weak transcription	Fetal Brain Female	brain
25	chr8:110554000-110569800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr8:110554000-110569800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr8:110554000-110569800	Weak transcription	Fetal Brain Male	brain
28	chr8:110554000-110569800	Weak transcription	Left Ventricle	heart
29	chr8:110554000-110569800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr8:110554000-110569800	Weak transcription	Small Intestine	intestine
31	chr8:110554000-110569800	Weak transcription	Thymus	Thymus
32	chr8:110554000-110570000	Weak transcription	Fetal Stomach	stomach
33	chr8:110554000-110570000	Weak transcription	Right Ventricle	heart
34	chr8:110554000-110571400	Weak transcription	Fetal Intestine Small	intestine
35	chr8:110554000-110571400	Weak transcription	Pancreas	Pancrea
36	chr8:110554000-110583000	Weak transcription	HMEC	breast
37	chr8:110554000-110589200	Weak transcription	Psoas Muscle	Psoas
38	chr8:110554200-110565800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr8:110554200-110566600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr8:110554200-110567200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr8:110554200-110569800	Weak transcription	Fetal Muscle Leg	muscle
42	chr8:110554200-110569800	Weak transcription	HSMMtube	muscle
43	chr8:110554200-110576000	Weak transcription	Brain Substantia Nigra	brain
44	chr8:110554400-110565000	Weak transcription	NHEK	skin
45	chr8:110554400-110565200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr8:110554400-110565200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr8:110554400-110565400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr8:110554400-110566400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr8:110554400-110566800	Weak transcription	Brain Anterior Caudate	brain
50	chr8:110554600-110565000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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