Variant report

Variant	rs7819565
Chromosome Location	chr8:110556519-110556520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110547547..110552585-chr8:110554404..110556574,4	K562	blood:
2	chr8:110551479..110553406-chr8:110554109..110556947,2	MCF-7	breast:
3	chr8:110553979..110556820-chr8:110650989..110652969,2	MCF-7	breast:
4	chr8:110550646..110556695-chr8:110561304..110567831,11	K562	blood:

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16879775	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4313129	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57175707	1.00[ASN][1000 genomes]
rs60319372	0.93[EUR][1000 genomes]
rs60917031	1.00[ASN][1000 genomes]
rs721076	1.00[CEU][hapmap];0.83[GIH][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700647	0.93[EUR][1000 genomes]
rs7834070	0.85[CEU][hapmap]
rs7838445	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110553000-110564200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr8:110553000-110565000	Weak transcription	Ovary	ovary
3	chr8:110553000-110565600	Weak transcription	Placenta	Placenta
4	chr8:110553000-110569800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:110553000-110569800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:110553000-110570000	Weak transcription	Lung	lung
7	chr8:110553000-110571800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:110553000-110587000	Weak transcription	Esophagus	oesophagus
9	chr8:110553200-110557000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr8:110553200-110557400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr8:110553400-110557000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr8:110553400-110566600	Weak transcription	Fetal Intestine Large	intestine
13	chr8:110553400-110569800	Weak transcription	Osteobl	bone
14	chr8:110553600-110557000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr8:110553800-110558000	Weak transcription	Stomach Mucosa	stomach
16	chr8:110553800-110566800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:110553800-110566800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:110553800-110569600	Weak transcription	Fetal Kidney	kidney
19	chr8:110553800-110569800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr8:110553800-110613000	Weak transcription	NHLF	lung
21	chr8:110554000-110557800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr8:110554000-110558000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:110554000-110558200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr8:110554000-110562000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:110554000-110563000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr8:110554000-110563600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr8:110554000-110563600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr8:110554000-110563600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr8:110554000-110565400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr8:110554000-110565400	Weak transcription	HSMM	muscle
31	chr8:110554000-110565600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr8:110554000-110565800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr8:110554000-110566600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr8:110554000-110567000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr8:110554000-110567000	Weak transcription	NH-A	brain
36	chr8:110554000-110567800	Weak transcription	Fetal Thymus	thymus
37	chr8:110554000-110569400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:110554000-110569600	Weak transcription	Fetal Brain Female	brain
39	chr8:110554000-110569800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr8:110554000-110569800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr8:110554000-110569800	Weak transcription	Fetal Brain Male	brain
42	chr8:110554000-110569800	Weak transcription	Left Ventricle	heart
43	chr8:110554000-110569800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr8:110554000-110569800	Weak transcription	Small Intestine	intestine
45	chr8:110554000-110569800	Weak transcription	Thymus	Thymus
46	chr8:110554000-110570000	Weak transcription	Fetal Stomach	stomach
47	chr8:110554000-110570000	Weak transcription	Right Ventricle	heart
48	chr8:110554000-110571400	Weak transcription	Fetal Intestine Small	intestine
49	chr8:110554000-110571400	Weak transcription	Pancreas	Pancrea
50	chr8:110554000-110583000	Weak transcription	HMEC	breast

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