Variant report

Variant	rs16882307
Chromosome Location	chr7:139791034-139791035
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:139774750..139777619-chr7:139789243..139791933,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17161392	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17161420	1.00[AMR][1000 genomes]
rs2362532	1.00[ASW][hapmap]
rs57695125	1.00[AMR][1000 genomes]
rs57746003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139777000-139799200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:139778800-139799400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:139779000-139812000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:139779400-139796000	Weak transcription	Fetal Heart	heart
5	chr7:139779400-139811200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:139782800-139798200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:139782800-139808200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:139783000-139808800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:139784400-139791400	Weak transcription	HMEC	breast
10	chr7:139784400-139792000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:139785000-139839600	Weak transcription	NHDF-Ad	bronchial
12	chr7:139785200-139793200	Weak transcription	K562	blood
13	chr7:139785400-139803000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:139785400-139803200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr7:139785800-139791600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:139786000-139791200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr7:139786400-139802800	Strong transcription	Placenta	Placenta
18	chr7:139786400-139803000	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr7:139786400-139803200	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr7:139786600-139802000	Strong transcription	Fetal Intestine Large	intestine
21	chr7:139786600-139802400	Strong transcription	Duodenum Mucosa	Duodenum
22	chr7:139786600-139803000	Strong transcription	Adipose Nuclei	Adipose
23	chr7:139786600-139803000	Strong transcription	Liver	Liver
24	chr7:139787000-139803000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr7:139787200-139795400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr7:139787200-139802000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:139787800-139802600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:139788000-139803000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:139788200-139803200	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr7:139788400-139796200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr7:139788400-139802200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:139788400-139803000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:139788600-139793000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr7:139788600-139795600	Weak transcription	HSMM	muscle
35	chr7:139788800-139803000	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr7:139788800-139803200	Strong transcription	Primary T cells from cord blood	blood
37	chr7:139789000-139803000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:139789200-139799400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr7:139789200-139803000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr7:139789200-139833200	Weak transcription	NH-A	brain
41	chr7:139789400-139791600	Strong transcription	HUVEC	blood vessel
42	chr7:139789400-139791800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:139789400-139795200	Weak transcription	Hela-S3	cervix
44	chr7:139789400-139802200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr7:139789400-139802400	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr7:139789400-139803000	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr7:139789400-139803000	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr7:139789600-139791400	Strong transcription	Psoas Muscle	Psoas
49	chr7:139789600-139796400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:139789600-139798200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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