Variant report

Variant	rs57695125
Chromosome Location	chr7:139951552-139951553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139895733..139897233-chr7:139950227..139952049,2	MCF-7	breast:
2	chr7:139945437..139948415-chr7:139949972..139952700,2	K562	blood:
3	chr7:139932119..139934323-chr7:139951167..139953374,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16882307	1.00[AMR][1000 genomes]
rs17161392	1.00[AMR][1000 genomes]
rs17161420	1.00[AMR][1000 genomes]
rs57402050	1.00[AMR][1000 genomes]
rs57746003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60760231	1.00[AMR][1000 genomes]
rs61135242	1.00[AMR][1000 genomes]
rs73160867	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1015840	chr7:139912355-139987681	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139939800-139953400	Weak transcription	Lung	lung
2	chr7:139941800-139953400	Weak transcription	Small Intestine	intestine
3	chr7:139944000-139959400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:139944800-139951800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:139944800-139953200	Weak transcription	Stomach Mucosa	stomach
6	chr7:139947400-139952800	Enhancers	HepG2	liver
7	chr7:139947800-139953000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:139948200-139953000	Weak transcription	Brain Anterior Caudate	brain
9	chr7:139948400-139953000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:139948400-139955200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr7:139948600-139952400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:139948800-139953000	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr7:139949000-139953000	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:139949400-139952800	Weak transcription	Fetal Intestine Large	intestine
15	chr7:139949400-139952800	Weak transcription	Fetal Intestine Small	intestine
16	chr7:139949400-139952800	Weak transcription	A549	lung
17	chr7:139949400-139953000	Weak transcription	Liver	Liver
18	chr7:139949400-139953400	Weak transcription	Brain Substantia Nigra	brain
19	chr7:139949600-139952600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:139950000-139952600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:139950600-139951600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr7:139950800-139952600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr7:139951000-139954200	Enhancers	Thymus	Thymus
24	chr7:139951200-139951600	Weak transcription	Placenta	Placenta
25	chr7:139951200-139952800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:139951200-139952800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr7:139951200-139959600	Weak transcription	Right Atrium	heart

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