Variant report

Variant	rs16882902
Chromosome Location	chr6:73523875-73523876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73521424..73523959-chr6:73529159..73530679,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16882851	1.00[JPT][hapmap]
rs16882900	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs55757172	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55963007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56217468	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73515600-73529400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:73519200-73524200	Enhancers	Fetal Heart	heart
4	chr6:73522200-73524600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:73522400-73526200	Weak transcription	Osteobl	bone
6	chr6:73522600-73529400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:73522600-73530600	Weak transcription	HSMM	muscle
8	chr6:73522600-73534600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:73522600-73534600	Weak transcription	NHDF-Ad	bronchial
10	chr6:73522800-73526600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:73523200-73526000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr6:73523600-73524000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:73523600-73524000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:73523600-73524200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:73523600-73524200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:73523600-73524200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr6:73523600-73524600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:73523600-73524800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:73523800-73524000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:73523800-73524000	Enhancers	Pancreas	Pancrea
21	chr6:73523800-73524000	Weak transcription	Psoas Muscle	Psoas
22	chr6:73523800-73524200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr6:73523800-73524200	Enhancers	Dnd41	blood
24	chr6:73523800-73524600	Enhancers	Primary T cells from cord blood	blood

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