Variant report

Variant	rs16882900
Chromosome Location	chr6:73518175-73518176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13209945	0.93[AFR][1000 genomes]
rs16882851	1.00[JPT][hapmap]
rs16882902	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4075241	0.81[LWK][hapmap]
rs4707994	0.83[YRI][hapmap]
rs55963007	0.80[ASN][1000 genomes]
rs9293914	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73508400-73521800	Weak transcription	HMEC	breast
2	chr6:73508600-73519400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:73508600-73521600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73509200-73523600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:73513600-73519200	Weak transcription	Fetal Heart	heart
7	chr6:73515600-73529400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:73517200-73518400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:73517800-73519600	Weak transcription	Psoas Muscle	Psoas
10	chr6:73518000-73519200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:73518000-73520800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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