Variant report

Variant	rs4075241
Chromosome Location	chr6:73530261-73530262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73521424..73523959-chr6:73529159..73530679,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16882900	0.81[LWK][hapmap]
rs28754709	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3903020	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73522600-73530600	Weak transcription	HSMM	muscle
3	chr6:73522600-73534600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:73522600-73534600	Weak transcription	NHDF-Ad	bronchial
5	chr6:73527200-73531400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:73527400-73530400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:73529200-73530600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:73529200-73530800	Enhancers	Primary T cells from cord blood	blood
9	chr6:73529200-73530800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr6:73529200-73530800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:73529200-73531000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:73529200-73531000	Enhancers	HMEC	breast
13	chr6:73529200-73531000	Enhancers	NHEK	skin
14	chr6:73529200-73531200	Enhancers	Dnd41	blood
15	chr6:73529200-73532400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:73529400-73530600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr6:73529400-73530600	Enhancers	Fetal Thymus	thymus
18	chr6:73529400-73530800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:73529400-73531000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:73529400-73531200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:73529600-73531000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr6:73529600-73532200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:73529600-73532800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:73529800-73531600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:73529800-73531800	Enhancers	Psoas Muscle	Psoas
26	chr6:73529800-73532800	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr6:73529800-73532800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr6:73529800-73533600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:73529800-73534800	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr6:73530000-73530400	Weak transcription	Thymus	Thymus
31	chr6:73530000-73530600	Enhancers	Fetal Heart	heart

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