Variant report

Variant	rs4707994
Chromosome Location	chr6:73513796-73513797
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10943061	0.80[EUR][1000 genomes]
rs16882900	0.83[YRI][hapmap]
rs3924067	0.88[ASN][1000 genomes]
rs4235870	0.80[EUR][1000 genomes]
rs4235871	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4293967	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs4421163	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs4610523	0.89[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4706514	0.80[EUR][1000 genomes]
rs4707991	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs4707992	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs4707995	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6453604	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs6453605	0.80[EUR][1000 genomes]
rs6453606	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6906378	0.80[EUR][1000 genomes]
rs6912655	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6926416	0.80[EUR][1000 genomes]
rs6926423	0.80[EUR][1000 genomes]
rs7740337	0.80[EUR][1000 genomes]
rs7746825	0.80[EUR][1000 genomes]
rs7760479	0.93[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9293914	0.89[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9341387	0.80[EUR][1000 genomes]
rs9351942	0.80[EUR][1000 genomes]
rs9351944	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9359006	0.80[EUR][1000 genomes]
rs9359007	0.80[EUR][1000 genomes]
rs9360597	0.80[EUR][1000 genomes]
rs9360599	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs9442847	0.80[EUR][1000 genomes]
rs9446753	0.80[EUR][1000 genomes]
rs9446760	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73501000-73517200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:73508400-73521800	Weak transcription	HMEC	breast
3	chr6:73508600-73519400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:73508600-73521600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:73509200-73523600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
7	chr6:73513600-73519200	Weak transcription	Fetal Heart	heart

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