Variant report

Variant	rs4707992
Chromosome Location	chr6:73498054-73498055
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs3924067	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4293967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707994	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs4707995	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs6453604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453606	0.91[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs6912655	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs9293913	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9360599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360602	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9446760	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9918453	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73479600-73507800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:73489800-73507000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:73492600-73508000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:73494000-73500600	Weak transcription	Fetal Brain Male	brain
5	chr6:73494000-73500800	Weak transcription	Esophagus	oesophagus
6	chr6:73494000-73500800	Weak transcription	Psoas Muscle	Psoas
7	chr6:73494400-73500600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:73494600-73508200	Weak transcription	Primary B cells from cord blood	blood
9	chr6:73496800-73498200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:73496800-73498200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:73496800-73498200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:73496800-73498200	Enhancers	Osteobl	bone
13	chr6:73496800-73499000	Enhancers	Fetal Heart	heart
14	chr6:73496800-73499000	Enhancers	HMEC	breast
15	chr6:73496800-73499200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:73497000-73498200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:73497000-73498400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:73497000-73499200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:73497000-73499800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:73497400-73498200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:73497800-73498800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:73497800-73498800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:73497800-73498800	Weak transcription	NHLF	lung
24	chr6:73497800-73500800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:73498000-73498800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:73498000-73499200	Enhancers	NHEK	skin
27	chr6:73498000-73499600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:73498000-73507800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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