Variant report

Variant	rs6912655
Chromosome Location	chr6:73526348-73526349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs3924067	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4235871	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4293967	0.85[CHB][hapmap];0.90[CHD][hapmap];0.85[MEX][hapmap]
rs4421163	0.85[CHB][hapmap];0.90[CHD][hapmap];0.81[MEX][hapmap]
rs4583938	0.86[MEX][hapmap]
rs4610523	0.81[CEU][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs4707991	0.85[CHB][hapmap];0.90[CHD][hapmap];0.81[MEX][hapmap]
rs4707992	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4707994	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4707995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707996	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6453603	0.82[TSI][hapmap]
rs6453604	0.83[CHB][hapmap]
rs6453605	0.82[TSI][hapmap]
rs6453606	0.87[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6919026	0.82[TSI][hapmap]
rs6926416	0.82[TSI][hapmap]
rs7740337	0.82[TSI][hapmap]
rs7740606	0.82[TSI][hapmap]
rs7760479	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7775641	0.82[TSI][hapmap]
rs9293914	0.81[CEU][hapmap];0.88[LWK][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9360597	0.82[TSI][hapmap]
rs9360599	0.85[CHB][hapmap];0.90[CHD][hapmap];0.85[MEX][hapmap]
rs9360602	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9446760	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73515600-73529400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:73522600-73529400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73522600-73530600	Weak transcription	HSMM	muscle
5	chr6:73522600-73534600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:73522600-73534600	Weak transcription	NHDF-Ad	bronchial
7	chr6:73522800-73526600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:73524000-73526400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:73524000-73528600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:73524200-73529200	Weak transcription	Dnd41	blood
11	chr6:73524200-73530000	Weak transcription	Fetal Heart	heart
12	chr6:73524400-73529200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:73524600-73529200	Weak transcription	Primary T cells from cord blood	blood
14	chr6:73524600-73529200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:73524800-73529200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:73525000-73529400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr6:73525200-73527800	Weak transcription	Fetal Brain Male	brain
18	chr6:73525800-73527800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:73526000-73528600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr6:73526200-73527400	Enhancers	Osteobl	bone

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