Variant report

Variant	rs4235871
Chromosome Location	chr6:73523136-73523137
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3924067	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4610523	0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs4707994	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4707995	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4707996	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6453606	0.84[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6912655	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7760479	0.93[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9293914	0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs9360602	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9446760	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73523600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:73515600-73529400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:73519200-73524200	Enhancers	Fetal Heart	heart
5	chr6:73522200-73523200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:73522200-73523600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:73522200-73524600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:73522400-73523200	Weak transcription	Psoas Muscle	Psoas
9	chr6:73522400-73523600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:73522400-73526200	Weak transcription	Osteobl	bone
11	chr6:73522600-73523600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:73522600-73523600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:73522600-73523800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:73522600-73529400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:73522600-73530600	Weak transcription	HSMM	muscle
16	chr6:73522600-73534600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:73522600-73534600	Weak transcription	NHDF-Ad	bronchial
18	chr6:73522800-73526600	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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