Variant report

Variant	rs9446760
Chromosome Location	chr6:73521952-73521953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73507068..73509853-chr6:73518738..73522635,3	K562	blood:
2	chr6:73521424..73523959-chr6:73529159..73530679,2	K562	blood:
3	chr6:73507973..73509853-chr6:73519641..73522635,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs3924067	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4235871	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4293967	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4421163	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4707991	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4707992	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4707994	0.82[ASN][1000 genomes]
rs4707995	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4707996	0.82[AMR][1000 genomes]
rs6453604	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6453606	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6912655	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7760479	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9293913	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9360599	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9360602	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9918453	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73523600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:73515600-73529400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:73519200-73524200	Enhancers	Fetal Heart	heart
5	chr6:73519400-73522600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:73519400-73522600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:73519400-73522800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:73519600-73522200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:73519600-73522600	Enhancers	NHDF-Ad	bronchial
10	chr6:73520000-73522600	Enhancers	NHLF	lung
11	chr6:73520400-73522000	Weak transcription	Aorta	Aorta
12	chr6:73520600-73522000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:73520600-73522400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:73520600-73522400	Enhancers	Psoas Muscle	Psoas
15	chr6:73520600-73522600	Enhancers	HSMM	muscle
16	chr6:73520800-73522400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:73520800-73522400	Enhancers	Fetal Lung	lung
18	chr6:73520800-73522600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:73520800-73522600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:73521000-73522200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr6:73521200-73522600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:73521400-73522200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:73521400-73522400	Enhancers	NH-A	brain
24	chr6:73521400-73522400	Enhancers	Osteobl	bone
25	chr6:73521400-73522600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr6:73521400-73522600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:73521400-73522600	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr6:73521400-73522600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:73521400-73522600	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr6:73521600-73522000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:73521600-73522200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:73521600-73522200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr6:73521600-73522400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr6:73521600-73522400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr6:73521600-73522400	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr6:73521600-73522400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:73521600-73522400	Enhancers	HSMMtube	muscle
38	chr6:73521600-73522600	Enhancers	H1 Cell Line	embryonic stem cell
39	chr6:73521600-73522600	Enhancers	H9 Cell Line	embryonic stem cell
40	chr6:73521600-73522600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:73521600-73522800	Enhancers	Placenta Amnion	Placenta Amnion
42	chr6:73521800-73522200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:73521800-73522400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:73521800-73522400	Enhancers	NHEK	skin

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