Variant report

Variant	rs6453606
Chromosome Location	chr6:73514264-73514265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10805966	0.80[JPT][hapmap]
rs11759755	0.80[JPT][hapmap]
rs11960994	0.80[JPT][hapmap]
rs3924067	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4235871	0.84[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4293967	0.90[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4421163	0.90[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs4610523	0.83[CEU][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes]
rs4706514	0.80[JPT][hapmap]
rs4707991	0.90[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs4707992	0.91[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs4707994	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4707995	0.87[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4707996	0.93[AMR][1000 genomes]
rs6453604	0.89[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs6912655	0.87[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6940084	0.80[JPT][hapmap]
rs7752076	0.80[JPT][hapmap]
rs7760479	0.88[CEU][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9293913	0.88[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs9293914	0.83[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9351942	0.80[JPT][hapmap]
rs9351944	0.82[EUR][1000 genomes]
rs9360599	0.90[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs9360602	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9446760	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9918453	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73501000-73517200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:73508400-73521800	Weak transcription	HMEC	breast
3	chr6:73508600-73519400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:73508600-73521600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:73509200-73523600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
7	chr6:73513600-73519200	Weak transcription	Fetal Heart	heart

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