Variant report

Variant	rs9293914
Chromosome Location	chr6:73521245-73521246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73507068..73509853-chr6:73518738..73522635,3	K562	blood:
2	chr6:73507973..73509853-chr6:73519641..73522635,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10805965	0.91[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs10805966	0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs10943059	0.83[EUR][1000 genomes]
rs10943061	0.86[EUR][1000 genomes]
rs11759755	0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11960994	0.82[CEU][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs12529830	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16882900	0.83[YRI][hapmap]
rs4235870	0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4235871	0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs4293967	0.82[MEX][hapmap]
rs4499888	0.81[CEU][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4583938	0.91[CHD][hapmap]
rs4610523	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4706514	0.82[CEU][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs4707987	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4707988	0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4707989	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4707990	0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4707993	0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4707994	0.89[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4707995	0.82[CEU][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs4707996	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6453603	0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6453605	0.82[CEU][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs6453606	0.83[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6904110	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6904313	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6906378	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6912655	0.81[CEU][hapmap];0.88[LWK][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6919026	0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6926416	0.82[CEU][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6926423	0.81[CEU][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6940084	0.82[CEU][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7740337	0.82[CEU][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs7740606	0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7746825	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7751090	0.82[CEU][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs7752076	0.82[CEU][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs7760479	0.82[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7775641	0.82[CEU][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9341387	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9342973	0.85[EUR][1000 genomes]
rs9350471	0.85[EUR][1000 genomes]
rs9351942	0.82[CEU][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs9351944	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9359006	0.86[EUR][1000 genomes]
rs9359007	0.86[EUR][1000 genomes]
rs9360597	0.82[CEU][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9360599	0.82[MEX][hapmap]
rs9442847	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9446752	0.80[CEU][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9446753	0.95[JPT][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73508400-73521800	Weak transcription	HMEC	breast
2	chr6:73508600-73521600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:73509200-73523600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:73515600-73529400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:73519200-73524200	Enhancers	Fetal Heart	heart
7	chr6:73519400-73522600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:73519400-73522600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:73519400-73522800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:73519600-73521600	Weak transcription	HSMMtube	muscle
11	chr6:73519600-73522200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:73519600-73522600	Enhancers	NHDF-Ad	bronchial
13	chr6:73520000-73522600	Enhancers	NHLF	lung
14	chr6:73520400-73521400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:73520400-73521400	Weak transcription	Osteobl	bone
16	chr6:73520400-73522000	Weak transcription	Aorta	Aorta
17	chr6:73520600-73522000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:73520600-73522400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:73520600-73522400	Enhancers	Psoas Muscle	Psoas
20	chr6:73520600-73522600	Enhancers	HSMM	muscle
21	chr6:73520800-73521400	Weak transcription	NH-A	brain
22	chr6:73520800-73521600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr6:73520800-73521800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:73520800-73522400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:73520800-73522400	Enhancers	Fetal Lung	lung
26	chr6:73520800-73522600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:73520800-73522600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:73521000-73521600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:73521000-73522200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr6:73521200-73521600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:73521200-73522600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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