Variant report
Variant | rs16883392 |
---|---|
Chromosome Location | chr8:113323129-113323130 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1024863 | 1.00[CHB][hapmap] |
rs10505179 | 0.85[YRI][hapmap] |
rs10955618 | 0.80[YRI][hapmap] |
rs11984540 | 1.00[MEX][hapmap] |
rs11987697 | 0.84[YRI][hapmap] |
rs11992219 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11996263 | 0.85[YRI][hapmap] |
rs16883361 | 0.81[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap] |
rs16883408 | 0.84[YRI][hapmap] |
rs16883413 | 0.94[YRI][hapmap] |
rs16883441 | 0.85[YRI][hapmap] |
rs16883450 | 0.85[YRI][hapmap] |
rs16883453 | 1.00[YRI][hapmap] |
rs16883478 | 0.90[ASW][hapmap];1.00[LWK][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1994795 | 0.80[YRI][hapmap] |
rs1994796 | 0.80[YRI][hapmap] |
rs2111428 | 0.81[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap] |
rs2201203 | 0.80[YRI][hapmap] |
rs56970648 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58989184 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73700618 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73700637 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73700677 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73700680 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv533857 | chr8:112819659-113801258 | Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv1022457 | chr8:113071774-113811177 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
3 | esv2755868 | chr8:113282795-113634842 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | esv2753595 | chr8:113283214-114190390 | Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
5 | esv2754232 | chr8:113294967-113634842 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | esv3356232 | chr8:113317176-113323174 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:113288800-113331400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr8:113322400-113324600 | Enhancers | Dnd41 | blood |