Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16883953	1.00[CEU][hapmap]
rs16883971	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16883997	0.84[ASN][1000 genomes]
rs16884001	1.00[CEU][hapmap];0.84[ASN][1000 genomes]
rs16884031	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs16884032	1.00[CEU][hapmap];0.84[ASN][1000 genomes]
rs16884053	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16884056	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs16884061	1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs16884069	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16884086	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs16884088	1.00[JPT][hapmap]
rs16884094	1.00[CEU][hapmap];0.88[ASN][1000 genomes]
rs16884126	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16884129	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16884148	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs231303	1.00[JPT][hapmap]
rs231307	1.00[JPT][hapmap]
rs231311	1.00[JPT][hapmap]
rs231324	1.00[JPT][hapmap]
rs231325	1.00[JPT][hapmap]
rs34742539	1.00[CEU][hapmap]
rs58963964	0.90[ASN][1000 genomes]
rs9643076	1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv534270	chr8:113585830-113979075	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	esv2754315	chr8:113736824-114048824	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv524089	chr8:113761143-113852777	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv891326	chr8:113777669-114091732	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113813400-113817600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:113816200-113818600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:113817200-113819800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:113817200-113820000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:113817200-113822800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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