Variant report

Variant	rs16884129
Chromosome Location	chr8:113830728-113830729
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11985496	1.00[AMR][1000 genomes]
rs11993017	1.00[AMR][1000 genomes]
rs11995039	1.00[AMR][1000 genomes]
rs16883975	1.00[AMR][1000 genomes]
rs16884032	1.00[CHD][hapmap]
rs16884053	1.00[CHD][hapmap]
rs16884056	0.81[ASN][1000 genomes]
rs16884061	0.95[CHD][hapmap];0.81[ASN][1000 genomes]
rs16884086	0.81[ASN][1000 genomes]
rs16884088	1.00[JPT][hapmap]
rs16884094	0.81[ASN][1000 genomes]
rs16884105	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16884126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs231303	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs231307	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs231311	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs231324	1.00[JPT][hapmap]
rs231325	1.00[JPT][hapmap]
rs34742539	1.00[CHD][hapmap]
rs58963964	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61428202	1.00[AMR][1000 genomes]
rs73700802	1.00[AMR][1000 genomes]
rs73702203	1.00[AMR][1000 genomes]
rs9643076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv534270	chr8:113585830-113979075	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	esv2754315	chr8:113736824-114048824	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv524089	chr8:113761143-113852777	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv891326	chr8:113777669-114091732	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv891327	chr8:113828980-114109342	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113826200-113831200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:113826400-113831200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:113826800-113830800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:113828600-113830800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr8:113828600-113831200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:113830000-113832800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:113830600-113831200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:113830600-113831600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:113830600-113831600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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