Variant report

Variant	rs16884313
Chromosome Location	chr4:31071866-31071867
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11941802	0.83[AMR][1000 genomes]
rs1499474	0.83[AMR][1000 genomes]
rs16884307	0.92[YRI][hapmap]
rs28594812	0.83[AMR][1000 genomes]
rs28696010	0.83[AMR][1000 genomes]
rs28719509	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs6840381	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv289500	chr4:31069939-31076406	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31058000-31077200	Weak transcription	Aorta	Aorta
2	chr4:31066400-31088600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:31067800-31073400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:31070600-31072000	Enhancers	Fetal Heart	heart
5	chr4:31070600-31088400	Weak transcription	Fetal Stomach	stomach
6	chr4:31070800-31073200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:31071000-31072600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:31071000-31073400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:31071000-31077000	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:31071200-31072400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:31071800-31072000	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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