Variant report

Variant	rs28719509
Chromosome Location	chr4:31082025-31082026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10003118	0.83[AFR][1000 genomes]
rs11941802	0.84[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1499474	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884307	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16884313	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs28489766	0.80[AFR][1000 genomes]
rs28495143	0.80[AFR][1000 genomes]
rs28594812	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28640086	0.83[AFR][1000 genomes]
rs28668569	0.80[AFR][1000 genomes]
rs28696010	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28738802	0.80[AFR][1000 genomes]
rs6448738	0.82[YRI][hapmap]
rs6840381	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9991482	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31066400-31088600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:31070600-31088400	Weak transcription	Fetal Stomach	stomach
3	chr4:31077800-31088600	Weak transcription	Aorta	Aorta
4	chr4:31078600-31085200	Weak transcription	Fetal Heart	heart
5	chr4:31082000-31082400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:31082000-31083800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:31082000-31087600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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