Variant report

Variant	rs28738802
Chromosome Location	chr4:31040250-31040251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10003118	0.84[AFR][1000 genomes]
rs11941802	0.84[AFR][1000 genomes]
rs28489766	1.00[AFR][1000 genomes]
rs28495143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28640086	0.84[AFR][1000 genomes]
rs28668569	1.00[AFR][1000 genomes]
rs28696010	0.84[AFR][1000 genomes]
rs28719509	0.80[AFR][1000 genomes]
rs6840381	0.84[AFR][1000 genomes]
rs73113500	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31033000-31042400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr4:31034200-31043000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:31036800-31042000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:31036800-31042200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:31036800-31042200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:31036800-31042600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:31037200-31041800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links